Welcome to GDEE’s documentation!

Gene Discovery and Enzyme Engineering (GDEE) is a Python package that provides the functionality necessary to run the Gene Discovery and Enzyme Engineering Platform developed under the project ShikiFactory 100 (European Union’s Horizon 2020 research and innovation programme under grant agreement number 814408).

Contents:

• Overview
  • What is GDEE?
  • How do I install GDEE?
  • How can I use GDEE?
  • How does GDEE work?
• Installation and Setup
  • System Requirements
  • Core Installation
  • Required External Programs
  • Next Steps
• Usage Instructions
  • Overview
  • Configuration Parameters Reference
  • Example Workflows
  • Useful Scripts
• Citation
  • Primary Citation
  • Project Acknowledgment
  • References
• License and Terms
  • Contributing
  • Version History

Indices and tables

• Index

• Module Index

• Search Page